Article

Issa, A Raouf, Menzies, Jonathan A C, Padmanabhan, Aishwarya and Alonso, Claudio R (2022) A novel post-developmental role of the Hox genes underlies normal adult behavior. Proceedings of the National Academy of Sciences of the United States of America, 119 (49). e2209531119 1-11. ISSN 0027-8424

Klann, Marleen, Issa, A Raouf, Pinho, Sofia and Alonso, Claudio R (2021) MicroRNA-dependent control of sensory neuron function regulates posture behavior in Drosophila. Journal of Neuroscience, 41 (40). pp. 8297-8308. ISSN 0270-6474

Issa, A. Raouf, Picao Osorio, João, Rito, Nuno, Chiappe, M. Eugenia and Alonso, Claudio R (2019) A single microRNA-Hox gene module controls equivalent movements in biomechanically distinct forms of Drosophila. Current Biology. ISSN 0960-9822

Kaschula, Richard, Pinho, Sofia and Alonso, Claudio R (2018) MicroRNA-dependent regulation of Hox gene expression sculpts fine-grain morphological patterns in a Drosophila appendage. Development, 145 (20). dev161133. ISSN 0950-1991

Vallejos Baier, Raul, Picao-Osorio, Joao and Alonso, Claudio R (2017) Molecular regulation of alternative polyadenylation (APA) within the Drosophila nervous system. Journal of Molecular Biology, 429 (21). pp. 3290-3300. ISSN 0022-2836

Picao-Osorio, Joao, Lago-Baldaia, Ines, Patraquim, Pedro and Alonso, Claudio R (2017) Pervasive behavioral effects of microRNA regulation in Drosophila. Genetics, 206 (3). pp. 1535-1548. ISSN 0016-6731

Warnefors, Maria, Hartmann, Britta, Thomsen, Stefan and Alonso, Claudio R (2016) Combinatorial gene regulatory functions underlie ultraconserved elements in Drosophila. Molecular Biology and Evolution, 33 (9). pp. 2294-2306. ISSN 0737-4038

Picao-Osorio, Joao, Johnston, Jamie, Landgraf, Matthias, Berni, Jimena and Alonso, Claudio R (2015) MicroRNA-encoded behavior in Drosophila. Science, 350 (6262). pp. 815-820. ISSN 0036-8075

Casadio, Angela, Longman, Dasa, Hug, Nele, Delavaine, Laurent, Vallejos Baier, Raul, Alonso, Claudio R and Caceres, Javier F (2015) Identification and characterization of novel factors that act in the nonsense-mediated mRNA decay pathway in nematodes, flies and mammals. EMBO reports, 16 (1). pp. 71-78. ISSN 1469-221X

Tyler-Smith, Chris, Chipman, Ariel D, Ferrier, David E K, Brena, Carlo, Qu, Jiaxin, Hughes, Daniel S T, Schröder, Reinhard, Torres-Oliva, Montserrat, Znassi, Nadia, Jiang, Huaiyang, Almeida, Francisca C, Alonso, Claudio R, Apostolou, Zivkos, Aqrawi, Peshtewani, Arthur, Wallace, Barna, Jennifer C J, Blankenburg, Kerstin P, Brites, Daniela, Capella-Gutiérrez, Salvador, Coyle, Marcus, Dearden, Peter K, Du Pasquier, Louis, Duncan, Elizabeth J, Ebert, Dieter, Eibner, Cornelius, Erikson, Galina, Evans, Peter D, Extavour, Cassandra G, Francisco, Liezl, Gabaldón, Toni, Gillis, William J, Goodwin-Horn, Elizabeth A, Green, Jack E, Griffiths-Jones, Sam, Grimmelikhuijzen, Cornelis J P, Gubbala, Sai, Guigó, Roderic, Han, Yi, Hauser, Frank, Havlak, Paul, Hayden, Luke, Helbing, Sophie, Holder, Michael, Hui, Jerome H L, Hunn, Julia P, Hunnekuhl, Vera S, Jackson, LaRonda, Javaid, Mehwish, Jhangiani, Shalini N, Jiggins, Francis M, Jones, Tamsin E, Kaiser, Tobias S, Kalra, Divya, Kenny, Nathan J, Korchina, Viktoriya, Kovar, Christie L, Kraus, F. Bernhard, Lapraz, François, Lee, Sandra L, Lv, Jie, Mandapat, Christigale, Manning, Gerard, Mariotti, Marco, Mata, Robert, Mathew, Tittu, Neumann, Tobias, Newsham, Irene, Ngo, Dinh N, Ninova, Maria, Okwuonu, Geoffrey, Ongeri, Fiona, Palmer, William J, Patil, Shobha, Patraquim, Pedro, Pham, Christopher, Pu, Ling-Ling, Putman, Nicholas H, Rabouille, Catherine, Ramos, Olivia Mendivil, Rhodes, Adelaide C, Robertson, Helen E, Robertson, Hugh M, Ronshaugen, Matthew, Rozas, Julio, Saada, Nehad, Sánchez-Gracia, Alejandro, Scherer, Steven E, Schurko, Andrew M, Siggens, Kenneth W, Simmons, DeNard, Stief, Anna, Stolle, Eckart, Telford, Maximilian J, Tessmar-Raible, Kristin, Thornton, Rebecca, van der Zee, Maurijn, von Haeseler, Arndt, Williams, James M, Willis, Judith H, Wu, Yuanqing, Zou, Xiaoyan, Lawson, Daniel, Muzny, Donna M, Worley, Kim C, Gibbs, Richard A, Akam, Michael and Richards, Stephen (2014) The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. PLoS Biology, 12 (11). e1002005 1-24. ISSN 1545-7885

Rogulja-Ortmann, Ana, Picao-Osorio, Joao, Villava, Casandra, Patraquim, Pedro, Lafuente, Elvira, Aspden, Julie, Thomsen, Stefan, Technau, Gerard M and Alonso, Claudio R (2014) The RNA-binding protein ELAV regulates Hox RNA processing, expression and function within the Drosophila nervous system. Development, 141 (10). pp. 2046-2056. ISSN 0950-1991

Costa, Marta, Calleja, Manuel, Alonso, Claudio R and Simpson, Pat (2014) The bristle patterning genes hairy and extramacrochaetae regulate the development of structures required for flight in Diptera. Developmental Biology, 388 (2). pp. 205-215. ISSN 0012-1606

Mallo, Moisés and Alonso, Claudio R (2013) The regulation of Hox gene expression during animal development. Development, 140 (19). pp. 3951-3963. ISSN 0950-1991

Alonso, Claudio R (2012) A complex 'mRNA degradation code' controls gene expression during animal development. Trends in Genetics, 28 (2). pp. 78-88. ISSN 0168-9525

Alonso, Claudio R (2012) A complex ‘mRNA degradation code’ controls gene expression during animal development. Trends in Genetics, 28 (2). pp. 78-88. ISSN 0168-9525

Patraquim, Pedro, Warnefors, Maria and Alonso, Claudio R (2011) Evolution of Hox post-transcriptional regulation by alternative polyadenylation and microRNA modulation within 12 Drosophila genomes. Molecular Biology and Evolution, 28 (9). pp. 2453-2460. ISSN 0737-4038

Avery, Paul, Vicente-Crespo, Marta, Francis, Deepthy, Nashchekina, Oxana, Alonso, Claudio R and Palacios, Isabel M (2011) Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner. RNA, 17 (4). pp. 624-38. ISSN 1355-8382

de Navas, Luis F., Reed, Hilary, Akam, Michael, Barrio, Rosa, Alonso, Claudio R. and Sánchez-Herrero, Ernesto (2011) Integration of RNA processing and expression level control modulates the function of the Drosophila Hox gene Ultrabithorax during adult development. Development, 138 (1). pp. 107-116. ISSN 1011-6370

Thomsen, Stefan, Anders, Simon, Chandra Janga, Sarath, Huber, Wolfgang and Alonso, Claudio R (2010) Genome-wide analysis of mRNA decay patterns during early Drosophila development. Genome Biology, 11 (9). R93. ISSN 1465-6906

Thomsen, Stefan, Azzam, Ghows, Kaschula, Richard, Williams, Lucy S. and Alonso, Claudio R. (2010) Developmental RNA processing of 3'UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs. Development, 137 (17). pp. 2951-2960. ISSN 1011-6370

Reed, Hilary C, Hoare, Tim, Thomsen, Stefan, Weaver, Thomas A, White, Robert A H, Akam, Michael and Alonso, Claudio R (2010) Alternative splicing modulates Ubx protein function in Drosophila melanogaster. Genetics, 184. pp. 745-758. ISSN 0016-6731

Alonso, Claudio R and Wilkins, Adam S (2005) The molecular elements that underlie developmental evolution. Nature Reviews Genetics, 6. pp. 709-715. ISSN 1471-0064

Alonso, Claudio R (2005) Nonsense-mediated RNA decay: a molecular system micromanaging individual gene activities and suppressing genomic noise. BioEssays, 27 (5). pp. 463-466. ISSN 0265-9247

Chang, Ming-Ling, Chen, Jeng-Chang, Alonso, Claudio R, Kornblihtt, Alberto R and Bissell, D Montgomery (2004) Regulation of fibronectin splicing in sinusoidal endothelial cells from normal or injured liver. Proceedings of the National Academy of Sciences, 101 (52). pp. 18093-18098. ISSN 0027-8424

Mössinger, Juliane C and Alonso, Claudio R (2004) Electronic evolution. Nature, 428 (6986). p. 896. ISSN 0028-0836

Roch, Fernando, Alonso, Claudio R and Akam, Michael (2003) The Drosophila miniature and dusky encode ZP-proteins required for cytoskeletal reorganisation during wing morphogenesis. Journal of Cell Science, 116 (7). pp. 1199-1207. ISSN 0021-9533

Alonso, Claudio R and Akam, Michael (2003) A Hox gene mutation that triggers Nonsense-mediated RNA decay and affects alternative splicing during Drosophila development. Nucleic Acids Research, 31 (14). pp. 3873-3880. ISSN 0305-1048

de la Mata, Manuel, Alonso, Claudio R, Kadener, Sebastián, Fededa, Juan P, Blaustein, Matı́as, Pelisch, Federico, Cramer, Paula, Bentley, David and Kornblihtt, Alberto R (2003) A slow RNA polymerase II affects alternative splicing in vivo. Molecular Cell, 12 (2). pp. 525-532. ISSN 1097-2765

Alonso, Claudio R (2002) Hox proteins: sculpting body parts by activating localized cell death. Current Biology, 12 (22). R776-R778. ISSN 0960-9822

Alonso, Claudio R, George, Jacob, Pesce, C Gustavo, Bissell, D Montgomery and Kornblihtt, Alberto R (2002) Fibronectin transcription in liver cells: promoter occupation and function in sinusoidal endothelial cells and hepatocytes. Biochemical and Biophysical Research Communications, 295 (5). pp. 1077-1084. ISSN 0006-291X

Alonso, Claudio R, Maxton-Kuechenmeister, Joerg and Akam, Michael (2001) Evolution of FTZ protein function in insects. Current Biology, 11 (18). pp. 1473-1478. ISSN 0960-9822

Rabinovich, G A, Alonso, C R, Sotomayor, C E, Durand, S, Bocco, J L and Riera, C M (2000) Molecular mechanisms implicated in galectin-1-induced apoptosis: activation of the AP-1 transcription factor and downregulation of Bcl-2. Cell Death & Differentiation, 7 (8). pp. 747-753.

Pesce, C Gustavo, Nogués, Guadalupe, Alonso, Claudio R, Baralle, Francisco E and Kornblihtt, Alberto R (1999) Interaction between the -170 CRE and the -150 CCAAT box is necessary for efficient activation of the fibronectin gene promoter by cAMP and ATF-2. FEBS Letters, 457 (3). pp. 445-451. ISSN 0014-5793

Alonso, Claudio R, Pesce, C Gustavo and Kornblihtt, Alberto R (1996) The CCAAT-binding proteins CP1 and NF-I cooperate with ATF-2 in the transcription of the fibronectin gene. Journal of Biological Chemistry, 271 (36). pp. 22271-22279. ISSN 0021-9258

Kornblihtt, A R, Pesce, C G, Alonso, C R, Cramer, P, Srebrow, A, Werbajh, S and Muro, A F (1996) The fibronectin gene as a model for transcription and splicing studies. FASEB Journal, 10. pp. 248-257. ISSN 0892-6638

Book Section

Alonso, Claudio (2010) Gene regulation in eukaryotes. In: Hartwell, Leland H, Hood, Leroy, Goldberg, Michael l, Reynolds, Ann E and Silver, Lee M (eds.) Genetics: from genes to genomes. McGraw-Hill. ISBN 9780073525266

Alonso, Claudio R (2008) The molecular biology underlying developmental evolution. In: Minelli, Alessandro and Fusco, Giuseppe (eds.) Evolving pathways: key themes in evolutionary developmental biology. Cambridge University Press, pp. 80-99. ISBN 9780521875004