A

Amin, Unum (2016) Cellular characterisation of small Open Reading Frame function in Drosophila melanogaster. Doctoral thesis (PhD), University of Sussex.

Amoiridis, Michalis (2022) Maintenance of heterochromatin genomic stability after topological stress. Doctoral thesis (PhD), University of Sussex.

B

Bartlett, Edward J (2013) Structural and functional characterisation of the Nonhomologous End-­‐Joining proteins of the archaeon Methanocella Paludicola. Doctoral thesis (PhD), University of Sussex.

Bassing, Craig H, Ranganath, Sheila, Murphy, Mike, Savic, Velibor, Gleason, Meagan and Alt, Frederick W (2008) Aberrant V(D)J recombination is not required for rapid development of H2ax/p53-deficient thymic lymphomas with clonal translocations. Blood, 111 (4). pp. 2163-2169. ISSN 0006-4971

Baxter, Jon (2012) A model for chromosome condensation based on the interplay between condensin and topoisomerase II. Trends in Genetics, 28 (3). pp. 110-117. ISSN 0168-9525

Bedir, Marisa (2020) Uncovering novel roles of Cyclophilin A in genome stability, cell cycle and cancers. Doctoral thesis (PhD), University of Sussex.

Bergman, Juraj, Eyre-Walker, Adam and Unset (2019) Does adaptive protein evolution proceed by large or small steps at the amino acid level? Molecular Biology and Evolution, 36 (5). pp. 990-998. ISSN 0737-4038

Blanshard, Robert Christopher (2019) An investigation of genome stability in human female meiosis by genome-wide chromosome fingerprinting and copy number analysis. Doctoral thesis (PhD), University of Sussex.

Borazjani Gholami, Farimah (2017) Role of replicative primase in lesion bypass during DNA replication. Doctoral thesis (PhD), University of Sussex.

Brožková, Anita (2020) The role of the human SMC5/6 complex in genome stability. Doctoral thesis (PhD), University of Sussex.

Budden, Alice (2021) Analysis of homologous recombination restarted replication forks in S. pombe. Doctoral thesis (PhD), University of Sussex.

Buist, David John (2019) Establishing a method to monitor replicative polymerase usage genome-wide in human cells. Doctoral thesis (PhD), University of Sussex.

C

Carballo, Jesús A and Cha, Rita S (2007) Meiotic roles of Mec1, a budding yeast homolog of mammalian ATR/ATM. Chromosome Research, 15 (5). pp. 539-550. ISSN 0967-3849

Carballo, Jesús A, Johnson, Anthony L, Sedgwick, Steven G and Cha, Rita S (2008) Phosphorylation of the axial element protein Hop1 by Mec1/Tel1 ensures meiotic interhomolog recombination. Cell, 132 (5). pp. 758-770. ISSN 0092-8674

Carballo, Jesús A, Panizza, Silvia, Serrentino, Maria Elisabetta, Johnson, Anthony L, Geymonat, Marco, Borde, Valérie, Klein, Franz and Cha, Rita S (2013) Budding yeast ATM/ATR control meiotic double-strand break (DSB) levels by down-regulating Rec114, an essential component of the DSB-machinery. PLoS Genetics, 9 (6). e1003545. ISSN 1553-7390

Chen, Xiangrong (2019) Discovering inhibitors of human Bloom syndrome protein (BLM). Doctoral thesis (PhD), University of Sussex.

Chen Eyre-Walker, Ying and Eyre-Walker, Adam (2014) The role of mutation rate variation and genetic diversity in the architecture of human disease. PLoS ONE, 9. e90166. ISSN 1932-6203

Crncec, Adrijana (2021) A new chemical genetics toolbox to analyse genes essential for the mitotic entry. Doctoral thesis (PhD), University of Sussex.

D

Deegan, Tom D, Baxter, Jonathan, Ortiz Bazán, María Ángeles, Yeeles, Joseph T P and Labib, Karim P M (2019) Pif1-Family helicases support fork convergence during DNA replication termination in eukaryotes. Molecular Cell, 74 (2). 231-244.e9. ISSN 1097-4164

G

Gilks, William P, Abbott, Jessica K and Morrow, Edward H (2014) Sex differences in disease genetics: evidence, evolution, and detection. Trends in Genetics, 30 (10). pp. 453-463. ISSN 0168-9525

Gilks, William P, Pennell, Tanya M, Flis, Ilona, Webster, Matthew T and Morrow, Edward H (2016) Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample. F1000Research, 5. a2644. ISSN 2046-1402

Gittens, William H, Johnson, Dominic J, Allison, Rachal M, Cooper, Tim J, Thomas, Holly and Neale, Matthew J (2019) A nucleotide resolution map of Top2-linked DNA breaks in the yeast and human genome. Nature Communications, 10. a4846. ISSN 2041-1723

Gossmann, Toni I, Waxman, David and Eyre-Walker, Adam (2014) Fluctuating selection models and Mcdonald-Kreitman type analyses. PLoS ONE, 9 (1). e84540. ISSN 1932-6203

Gossmann, Toni Ingolf (2012) Investigating genome wide patterns of natural selection in eukaryotes. Doctoral thesis (PhD), University of Sussex.

Gudjonsson, Thorkell, Altmeyer, Matthias, Savic, Velibor, Toledo, Luis, Dinant, Christoffel, Grøfte, Merete, Bartkova, Jirina, Poulsen, Maria, Oka, Yasuyoshi, Bekker-Jensen, Simon, Mailand, Niels, Neumann, Beate, Heriche, Jean-Karim, Shearer, Robert, Saunders, Darren, Bartek, Jiri, Lukas, Jiri and Lukas, Claudia (2012) TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes. Cell, 150 (4). pp. 697-709. ISSN 1097-4172

H

Hart, Lesley Ruth (2013) Dissecting the genotype to phenotype relationships of genomic disorders. Doctoral thesis (PhD), University of Sussex.

J

Jeggo, Penny and Löbrich, Markus (2017) A process of resection-dependent nonhomologous end joining involving the goddess Artemis. Trends in Biochemical Sciences, 42 (9). pp. 690-701. ISSN 0968-0004

Jeggo, Penny A, Downs, Jessica A and Gasser, Susan M (2017) Chromatin modifiers and remodellers in DNA repair and signalling. Philosophical Transactions B: Biological Sciences, 372 (1731). pp. 1-6. ISSN 0962–8436

Jones, Christopher I, Grima, Dominic P, Waldron, Joseph A, Jones, Sue, Parker, Hannah N and Newbury, Sarah F (2013) The 5'-3' exoribonuclease Pacman (Xrn1) regulates expression of the heat shock protein Hsp67Bc and the microRNA miR-277-3p in Drosophila wing imaginal discs. RNA Biology, 10 (8). pp. 1345-1355. ISSN 1547-6286

Jones, Christopher I, Pashler, Amy L, Towler, Benjamin P, Robinson, Sophie R and Newbury, Sarah F (2016) RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1. Nucleic Acids Research, 44 (1). pp. 267-280. ISSN 0305-1048

K

Karasozen, Yigit, Osbun, Joshua W, Parada, Carolina Angelica, Busald, Tina, Tatman, Philip, Gonzalez-Cuyar, Luis F, Hale, Christopher J, Alcantara, Diana, O'Driscoll, Mark, Dobyns, William B, Murray, Mitzi, Kim, Louis J, Byers, Peter, Dorschner, Michael O and Ferreira, Manuel (2019) Somatic PDGFRB activating variants in fusiform cerebral aneurysms. American Journal of Human Genetics, 104 (5). pp. 968-976. ISSN 1537-6605

Kaschula, Richard (2014) The regulation of Hox genes by microRNAs during Drosophila development. Doctoral thesis (PhD), University of Sussex.

Keen, Benjamin A, Bailey, Laura, Jozwiakowski, Stanislaw and Doherty, Aidan J (2014) Human PrimPol mutation associated with high myopia has a DNA replication defect. Nucleic Acids Research, 42 (19). pp. 12102-12111. ISSN 0305-1048

Keszthelyi, Andrea, Minchell, Nicola and Baxter, Jon (2016) The causes and consequences of topological stress during DNA replication. Genes, 7 (12). p. 134. ISSN 2073-4425

Künstner, Axel, Hoffmann, Margarete, Fraser, Bonnie A, Kottler, Verena A, Sharma, Eshita, Weigel, Detlef and Dreyer, Christine (2016) The genome of the Trinidadian guppy, Poecilia reticulata, and variation in the Guanapo population. PLoS ONE, 11 (12). e0169087. ISSN 1932-6203

L

Lanfear, Robert, Kokko, Hanna and Eyre-Walker, Adam (2014) Population size and the rate of evolution. Trends in Ecology and Evolution, 29 (1). pp. 33-41. ISSN 0169-5347

Legan, Kevin, Goodyear, Richard, Morin, Matias, Mencia, Angeles, Pollard, Hilary, Olavarrieta, Leticia, Korchagina, Julia Jurievna, Modiamo-Hoybjor, Silvia, Mayo, Fernando, Moreno, Felipe, Moreno-Pelayo, Miguel-Angel and Richardson, Guy (2014) Three deaf mice: mouse models for TECTA-based human hereditary deafness reveal domain-specific structural phenotypes in the tectorial membrane. Human Molecular Genetics, 23 (10). pp. 2551-2568. ISSN 0964-6906

Loomis, Rebecca J, Naoe, Yoshinori, Parker, J Brandon, Savic, Velibor, Bozovsky, Matthew R, Macfarlan, Todd, Manley, James L and Chakravarti, Debabrata (2009) Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation. Molecular Cell, 33 (4). pp. 450-461. ISSN 1097-2765

Lukas, Claudia, Savic, Velibor, Bekker-Jensen, Simon, Doil, Carsten, Neumann, Beate, Pedersen, Ronni Sølvhøj, Grøfte, Merete, Chan, Kok Lung, Hickson, Ian David, Bartek, Jiri and Lukas, Jiri (2011) 53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress. Nature Cell Biology, 13 (3). pp. 243-253. ISSN 1465-7392

López Ruiz, Luz María (2022) Investigating meiotic DNA double-strand break interference in S. cerevisiae. Doctoral thesis (PhD), University of Sussex.

M

Machin, Felix, Torres-Rosell, Jordi, De Piccoli, Giacomo, Carballo, Jesus, Cha, Rita, Jarmuz, Adam and Aragon, Luis (2006) Transcription of ribosomal genes can cause nondisjunction. The Journal of Cell Biology (JCB), 173 (6). pp. 893-903. ISSN 0021-9525

Macpherson, Annie (2017) Metabolic dysfunction and impairments in the DNA Damage Response: dissecting a pathomechanistic link between Microcephalic Primordial Dwarfisms and cancer cachexia. Doctoral thesis (PhD), University of Sussex.

Minchell, Nicola E (2019) DNA topological stress during DNA replication in Saccharomyces cerevisiae. Doctoral thesis (PhD), University of Sussex.

Mumtaz, Muhammad Ali Shahzad (2016) High-throughput assessment of small open reading frame translation in Drosophila melanogaster. Doctoral thesis (PhD), University of Sussex.

N

Nagarajan, Vinay K, Jones, Christopher I, Newbury, Sarah F and Green, Pamela J (2013) XRN 5'→3' exoribonucleases: structure, mechanisms and functions. BBA - Biochimica et Biophysica Acta, 1829 (6-7). pp. 590-603.

O

Olukoga, Tomisin (2018) Investigations into the spatial distribution of γH2AX around a DNA double-strand break and the analysis of double-strand break mobility. Doctoral thesis (PhD), University of Sussex.

P

Patraquim, Pedro, Mumtaz, Muhammad Ali Shahzad, Pueyo, Jose Ignacio, Aspden, Julie Louise and Couso, Juan-Pablo (2020) Developmental regulation of canonical and small ORF translation from mRNAs. Genome Biology, 21. a128 1-26. ISSN 1474-760X

Phelps, Sarah (2016) Analysis of the Ies6 subunit of the INO80 chromatin remodelling complex. Doctoral thesis (PhD), University of Sussex.

Ptasińska, Katarzyna (Katie) (2018) Studying DNA replication dynamics in Schizosaccharomyces pombe using next generation sequencing. Doctoral thesis (PhD), University of Sussex.

R

Rogoyski, Oliver M, Pueyo-Marques, Jose, Couso, Juan Pablo and Newbury, Sarah F (2017) Functions of long non-coding RNAs in human disease and their conservation in Drosophila development. Biochemical Society Transactions, 45 (4). pp. 895-904. ISSN 0300-5127

S

Savic, Velibor, Sanborn, Keri B, Orange, Jordan S and Bassing, Craig H (2009) Chipping away at gamma-H2AX foci. Cell Cycle, 8 (20). pp. 3285-3290. ISSN 1538-4101

Savic, Velibor, Yin, Bu, Maas, Nancy L, Bredemeyer, Andrea L, Carpenter, Andrea C, Helmink, Beth A, Yang-Iott, Katherine S, Sleckman, Barry P and Bassing, Craig H (2009) Formation of dynamic gamma-H2AX domains along broken DNA strands is distinctly regulated by ATM and MDC1 and dependent upon H2AX densities in chromatin. Molecular Cell, 34 (3). pp. 298-310. ISSN 1097-2765

Skouteri, Meliti (2017) Characterisation of the avian TopBP1 protein and its functions. Doctoral thesis (PhD), University of Sussex.

Soni, Vivak (2021) Patterns of natural selection across the human genome. Doctoral thesis (PhD), University of Sussex.

T

Thomas, David John (2014) Transcription regulation: models for combinatorial regulation and functional specificity. Doctoral thesis (PhD), University of Sussex.

Towler, Benjamin P, Jones, Christopher I and Newbury, Sarah F (2015) Mechanisms of regulation of mature miRNAs. Biochemical Society Transactions, 43 (6). pp. 1208-1214. ISSN 0300-5127

V

Valente, Enza Maria, Abou-Sleiman, Patrick M, Caputo, Viviana, Muqit, Miratul M K, Harvey, Kirsten, Gispert, Suzana, Ali, Zeeshan, Del Turco, Domenico, Bentivoglio, Anna Rita, Healy, Daniel G, Albanese, Alberto, Nussbaum, Robert, González-Maldonado, Rafael, Deller, Thomas, Salvi, Sergio, Cortelli, Pietro, Gilks, William P, Latchman, David S, Harvey, Robert J, Dallapiccola, Bruno, Auburger, Georg and Wood, Nicholas W (2004) Hereditary early-onset Parkinson's disease caused by mutations in PINK1. Science, 304 (5674). pp. 1158-60. ISSN 1095-9203

Van Esch, Hilde, Colnaghi, Rita, Freson, Kathleen, Starokadomskyy, Petro, Zankl, Andreas, Backx, Liesbeth, Abramowicz, Iga, Outwin, Emily, Rohena, Luis, Faulkner, Claire, Leong, Gary M, Newbury-Ecob, Ruth A, Challis, Rachel C, Õunap, Katrin, Jaeken, Jacques, Seuntjens, Eve, Devriendt, Koen, Burstein, Ezra, Low, Karen J and O'Driscoll, Mark (2019) Defective DNA polymerase α-primase leads to X-linked intellectual disability associated with severe growth retardation, microcephaly, and hypogonadism. American Journal of Human Genetics, 104 (5). pp. 957-967. ISSN 1537-6605

Vesely, Clare (2013) Investigation of the mechanisms of the G2/M phase transition in human cells – the role of Greatwall kinase. Doctoral thesis (PhD), University of Sussex.

W

Walker, Sarah A (2012) Investigating the role of the ATR-dependent DNA damage response in the aetiology of microcephalic primordial dwarfism disorders. Doctoral thesis (PhD), University of Sussex.

Warnefors, Maria, Hartmann, Britta, Thomsen, Stefan and Alonso, Claudio R (2016) Combinatorial gene regulatory functions underlie ultraconserved elements in Drosophila. Molecular Biology and Evolution, 33 (9). pp. 2294-2306. ISSN 0737-4038

West, Michelle (2017) Chromatin reorganisation in Epstein-Barr virus-infected cells and its role in cancer development. Current Opinion in Virology, 26. pp. 149-155. ISSN 1879-6257

West, Michelle and Farrell, Paul (2017) Roles of RUNX in B cell immortalisation. In: Groner Yoram, Yoram, Ito, Yoshiaki, Liu, Paul, Neil, James, Speck, Nancy and van Wijnen, Andre (eds.) RUNX proteins in development and cancer. Advances in experimental medicine and biology, 962 . Springer Singapore, pp. 283-298. ISBN 9789811032318

Westhorpe, Rose (2021) Investigating the functions of Tof1/Timeless in Saccharomyces cerevisiae and human cells. Doctoral thesis (PhD), University of Sussex.

Wood, C David, Veenstra, Hildegonda, Khasnis, Sarika, Gunnell, Andrea, Webb, Helen M, Shannon-Lowe, Claire, Andrews, Simon, Osborne, Cameron S and West, Michelle J (2016) MYC activation and BCL2L11 silencing by a tumour virus through the large-scale reconfiguration of enhancer-promoter hubs. eLife, 5. e18270 1-23. ISSN 2050-084X

Wright, Ellie M (2022) Investigating the link between chromosome structure and meiotic recombination in S. cerevisiae. Doctoral thesis (PhD), University of Sussex.

Y

Yin, Bu, Savic, Velibor, Juntilla, Marisa M, Bredemeyer, Andrea L, Yang-Iott, Katherine S, Helmink, Beth A, Koretzky, Gary A, Sleckman, Barry P and Bassing, Craig H (2009) Histone H2AX stabilizes broken DNA strands to suppress chromosome breaks and translocations during V(D)J recombination. Journal of Experimental Medicine, 206 (12). pp. 2625-2639. ISSN 0022-1007