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Article

Gunnell, Andrea, Webb, Helen M, Wood, David C, McClellan, Michael J, Wichaidit, Billy, Kempkes, Bettina, Richard, Jenner G, Cameron, Osborne, Farrell, Paul J and West, Michelle J (2016) RUNX super-enhancer control through the Notch pathway by Epstein-Barr virus transcription factors regulates B cell growth. Nucleic Acids Research, 44 (10). pp. 4636-4650. ISSN 0305-1048

Guilliam, Thomas A, Bailey, Laura J, Brissett, Nigel C and Doherty, Aidan J (2016) PolDIP2 interacts with human PrimPol and enhances its DNA polymerase activities. Nucleic Acids Research, 44 (7). pp. 3317-3329. ISSN 0305-1048

Zabrady, Katerina, Adamus, Marek, Vondrova, Lucie, Liao, Chunyan, Skoupilova, Hana, Novakova, Marketa, Jurcisinova, Lenka, Alt, Aaron, Oliver, Antony W, Lehmann, Alan R and Palecek, Jan J (2016) Chromatin association of the SMC5/6 complex is dependent on binding of its NSE3 subunit to DNA. Nucleic Acids Research, 44 (3). pp. 1064-1079. ISSN 1362-4962

Gunnell, Andrea, Webb, Helen M, Wood, David, McClellan, Michael J, Wichaidit, Billy, Kempkes, Bettina, Jenner, Richard G, Osborne, Cameron, Farrell, Paul J and West, Michelle J (2016) RUNXsuper-enhancer control through the Notch pathway by Epstein-Barr virus transcription factors regulates B cell growth. Nucleic Acids Research. ISSN 0305-1048

Jones, Christopher I, Pashler, Amy L, Towler, Benjamin P, Robinson, Sophie R and Newbury, Sarah F (2016) RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1. Nucleic Acids Research, 44 (1). pp. 267-280. ISSN 0305-1048

Alagoz, Meryem, Katsuki, Yoko, Ogiwara, Hideaki, Ogi, Tomoo, Shibata, Atsushi, Kakarougkas, Andreas and Jeggo, Penny (2015) SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells. Nucleic Acids Research, 43 (16). pp. 7931-7944. ISSN 0305-1048

Breslin, Claire, Hornyak, Peter, Ridley, Andrew, Rulten, Stuart L, Hanzlikova, Hana, Oliver, Antony W and Caldecott, Keith W (2015) The XRCC1 phosphate-binding pocket binds poly (ADP-ribose) and is required for XRCC1 function. Nucleic Acids Research, 43 (14). pp. 6934-6944. ISSN 0305-1048

Ramasubramanyan, Sharada, Osborn, Kay, Al-Mohammad, Rajaei, Naranjo Perez-Fernandez, Ijiel B, Zuo, Jianmin, Balan, Nicolae, Godfrey, Anja, Patel, Harshil, Peters, Gordon, Rowe, Martin, Jenner, Richard G and Sinclair, Alison J (2015) Epstein-Barr virus transcription factor Zta acts through distal regulatory elements to directly control cellular gene expression. Nucleic Acids Research, 43 (7). pp. 3563-3577. ISSN 0305-1048

Guilliam, Thomas A, Jozwiakowski, Stanislaw K, Ehlinger, Aaron, Barnes, Ryan P, Rudd, Sean G, Bailey, Laura J, Skehel, J Mark, Eckert, Kristin A, Chazin, Walter J and Doherty, Aidan J (2015) Human PrimPol is a highly error-prone polymerase regulated by single-stranded DNA binding proteins. Nucleic Acids Research, 43 (2). pp. 1056-1068. ISSN 0305-1048

Bartlett, Edward J, Brissett, Nigel C, Plocinski, Przemyslaw, Carlberg, Tom and Doherty, Aidan J (2015) Molecular basis for DNA strand displacement by NHEJ repair polymerases. Nucleic Acids Research. gkv965. ISSN 0305-1048

Guilliam, Thomas A, Keen, Benjamin A, Brissett, Nigel C and Doherty, Aidan J (2015) Primase-polymerases are a functionally diverse superfamily of replication and repair enzymes. Nucleic Acids Research, 43 (14). pp. 6651-6664. ISSN 0305-1048

Alagoz, Meryem, Katsuki, Yoko, Ogiwara, Hideaki, Ogi, Tomoo, Shibata, Atsushi, Kakarougkas, Andreas and Jeggo, Penny (2015) SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells. Nucleic Acids Research, 43 (16). pp. 7931-7944. ISSN 0305-1048

Etheridge, Thomas J, Boulineau, Rémi L, Herbert, Alex, Watson, Adam T, Daigaku, Yasukazu, Tucker, Jem, George, Sophie, Jönsson, Peter, Palayret, Matthieu, Lando, David, Laue, Ernest, Osborne, Mark A, Klenerman, David, Lee, Steven F and Carr, Antony M (2014) Quantification of DNA-associated proteins inside eukaryotic cells using single-molecule localization microscopy. Nucleic Acids Research, 42 (19). e146. ISSN 0305-1048

Jozwiakowski, Stanislaw A, Keith, Brian J, Gilroy, Louise, Doherty, Aidan J and Connolly, Bernard A (2014) An archaeal family-B DNA polymerase variant able to replicate past DNA damage: occurrence of replicative and translesion synthesis polymerases within the B family. Nucleic Acids Research, 42 (15). pp. 9949-9963. ISSN 0305-1048

Etheridge, Thomas J, Boulineau, Rémi L, Herbert, Alex, Watson, Adam T, Daigaku, Yasukazu, Tucker, Jem, George, Sophie, Jönsson, Peter, Palayret, Matthieu, Lando, David, Laue, Ernest, Osborne, Mark A, Klenerman, David, Lee, Steven F and Carr, Antony M (2014) Quantification of DNA-associated proteins inside eukaryotic cells using single-molecule localization microscopy. Nucleic Acids Research, 42 (19). e146-e146. ISSN 0305-1048

Rulten, Stuart L, Rotheray, Amy, Green, Ryan L, Grundy, Gabrielle J, Moore, Duncan A Q, Gómez-Herreros, Fernando, Hafezparast, Majid and Caldecott, Keith W (2014) PARP-1 dependent recruitment of the amyotrophic lateral sclerosis-associated protein FUS/TLS to sites of oxidative DNA damage. Nucleic Acids Research, 42 (1). pp. 307-314. ISSN 1362-4962

Keen, Benjamin A, Bailey, Laura, Jozwiakowski, Stanislaw and Doherty, Aidan J (2014) Human PrimPol mutation associated with high myopia has a DNA replication defect. Nucleic Acids Research, 42 (19). pp. 12102-12111. ISSN 0305-1048

Keen, Benjamin A, Jozwiakowski, Stanislaw K, Bailey, Laura J, Bianchi, Julie and Doherty, Aidan J (2014) Molecular dissection of the domain architecture and catalytic activities of human PrimPol. Nucleic Acids Research, 42 (9). pp. 5830-5845. ISSN 0305-1048

Alagoz, Meryem, Wells, Owen S and El-Khamisy, Sherif F (2014) TDP1 deficiency sensitizes human cells to base damage via distinct topoisomerase I and PARP mechanisms with potential applications for cancer therapy. Nucleic Acids Research, 42 (5). pp. 3089-3103. ISSN 0305-1048

Chambers, Anna L, Pearl, Laurence H, Oliver, Antony W and Downs, Jessica A (2013) The BAH domain of Rsc2 is a histone H3 binding domain. Nucleic Acids Research, 41 (19). pp. 9168-9182. ISSN 0305-1048

Liu, Xiangrui, Wilcken, Rainer, Joerger, Andreas C, Chuckowree, Irina S, Amin, Jahangir, Spencer, John and Fersht, Alan R (2013) Small molecule induced reactivation of mutant p53 in cancer cells. Nucleic Acids Research, 41 (12). pp. 6034-6044. ISSN 0305-1048

Tabib-Salazar, Aline, Liu, Bing, Doughty, Philip, Lewis, Richard A, Ghosh, Somadri, Parsy, Marie-Laure, Simpson, Peter J, O'Dwyer, Kathleen, Matthews, Steve J and Paget, Mark S (2013) The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase. Nucleic Acids Research, 41 (11). pp. 5679-5691. ISSN 0305-1048

Balik, Ales, Penn, Andrew C, Nemoda, Zsofia and Greger, Ingo H (2013) Activity-regulated RNA editing in select neuronal subfields in hippocampus. Nucleic Acids Research, 41 (2). pp. 1124-1134. ISSN 0305-1048

Penn, Andrew C, Balik, Ales and Greger, Ingo H (2013) Steric antisense inhibition of AMPA receptor Q/R editing reveals tight coupling to intronic editing sites and splicing. Nucleic Acids Research, 41 (2). pp. 1113-1123. ISSN 0305-1048

Kakarougkas, Andreas, Ismail, Amani, Katsuki, Yoko, Freire, Raimundo, Shibata, Atsushi and Jeggo, Penny A (2013) Co-operation of BRCA1 and POH1 relieves the barriers posed by 53BP1 and RAP80 to resection. Nucleic Acids Research, 41 (22). pp. 10298-10311. ISSN 0305-1048

Dziadkowiec, D, Kramarz, K, Kanik, K, Wisniewski, P and Carr, A M (2013) Involvement of Schizosaccharomyces pombe rrp1+ and rrp2+ in the Srs2- and Swi5/Sfr1-dependent pathway in response to DNA damage and replication inhibition. Nucleic Acids Research, 41 (17). pp. 8196-8209. ISSN 0305-1048

Kakarougkas, Andreas, Ismail, Amani, Klement, Karolin, Goodarzi, Aaron A, Conrad, Sandro, Freire, Raimundo, Shibata, Atsushi, Lobrich, Markus and Jeggo, Penny A (2013) Opposing roles for 53BP1 during homologous recombination. Nucleic Acids Research, 41 (21). pp. 9719-9731. ISSN 0305-1048

El Omari, Kamel, Meier, Christoph, Kainov, Denis, Sutton, Geoff, Grimes, Jonathan M, Poranen, Minna M, Bamford, Dennis H, Tuma, Roman, Stuart, David I and Mancini, Erika J (2013) Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution. Nucleic Acids Research, 41 (20). pp. 9396-9410. ISSN 1362-4962

Niimi, Atsuko, Chambers, Anna L, Downs, Jessica A and Lehmann, Alan R (2012) A role for chromatin remodellers in replication of damaged DNA. Nucleic Acids Research, 40 (15). pp. 7393-7403. ISSN 0305-1048

Reynolds, John J, Walker, Alexandra K, Gilmore, Edward C, Walsh, Christopher A and Caldecott, Keith W (2012) Impact of PNKP mutations associated with microcephaly, seizures and developmental delay on enzyme activity and DNA strand break repair. Nucleic Acids Research. ISSN 1362-4962

Zeng, Z, Sharma, A, Ju, L, Murai, J, Umans, L, Vermeire, L, Pommier, Y, Takeda, S, Huylebroeck, D, Caldecott, K and El-Khamisy, S (2012) TDP2 promotes repair of topoisomerase I-mediated DNA damage in the absence of TDP1. Nucleic Acids Research, 40 (17). pp. 8371-8380. ISSN 1362-4962

Rappas, Mathieu, Oliver, Antony W and Pearl, Laurence H (2011) Structure and function of the Rad9-binding region of the DNA-damage checkpoint adaptor TopBP1. Nucleic Acids Research, 39 (1). pp. 313-324. ISSN 0305-1048

Murakami, Yoichi, Spriggs, Ruth V, Nakamura, Haruki and Jones, Susan (2010) PiRaNhA: A server for the computational prediction of RNA-binding residues in protein sequences. Nucleic Acids Research, 38 (SUPP2). W412-W416. ISSN 03051048

Varnai, Peter and Timsit, Youri (2010) Differential stability of DNA crossovers in solution mediated by divalent cations. Nucleic Acids Research, 38 (12). pp. 4163-4172. ISSN 0305-1048

Tarentyev, Y, Johnson, R, Neale, Matt, Khisroon, M, Bishop-Bailey, A and Goldman, A.S.H (2010) Evidence that MEK1 positively promotes interhomologue double-strand break repair. Nucleic Acids Research, 38 (13). pp. 4349-4360. ISSN 03051048

Covo, Shay, de Villartay, Jean-Pierre, Jeggo, Penny A and Livneh, Zvi (2009) Translesion DNA synthesis-assisted non-homologous end-joining of complex double-strand breaks prevents loss of DNA sequences in mammalian cells. Nucleic Acids Research, 37 (20). pp. 6737-6745. ISSN 0305-1048

Jozwiakowski, Stanislaw and Connolly, BA (2009) Plasmid-based lacZalpha assay for DNA polymerase fidelity: application to archaeal family-B DNA polymerase. Nucleic Acids Research, 37 (15). e102. ISSN 0305-1048

Giamas, Georgios, Castellano, Leandro, Feng, Qin, Knippschild, Uwe, Jacob, Jimmy, Thomas, Ross S, Coombes, R Charles, Smith, Carolyn L, Jiao, Long R and Stebbing, Justin (2009) CK1δ modulates the transcriptional activity of ERα via AIB1 in an estrogen-dependent manner and regulates ERα-AIB1 interactions. Nucleic Acids Research, 37 (9). pp. 3110-3123. ISSN 0305-1048

Ali, Ammar A. E., Jukes, Rachel M., Pearl, Laurence H. and Oliver, Antony W. (2009) Specific recognition of a multiply phosphorylated motif in the DNA repair scaffold XRCC1 by the FHA domain of human PNK. Nucleic Acids Research, 37 (5). pp. 1701-1712. ISSN 0305-1048

Limsirichaikul, Siripan, Niimi, Atsuko, Fawcett, Heather, Lehmann, Alan, Yamashita, Shunichi and Ogi, Tomoo (2009) A rapid non-radioactive technique for measurement of repair synthesis in primary human fibroblasts by incorporation of Ethynyl deoxyuridine (EdU). Nucleic Acids Research, 37 (4). ISSN 0305-1048

Richardson, Christopher J, Gao, Qiong, Mitsopoulous, Costas, Zvelebil, Marketa, Pearl, Laurence H and Pearl, Frances M G (2009) MoKCa database - mutations of kinases in cancer. Nucleic Acids Research, 37 (S1). D824-D831. ISSN 0305-1048

Riballo, Enriqueta, Woodbine, Lisa, Stiff, Thomas, Walker, Sarah A., Goodarzi, Aaron A. and Jeggo, Penny A. (2009) XLF-Cernunnos promotes DNA ligase IV-XRCC4 re-adenylation following ligation. Nucleic Acids Research, 37 (2). pp. 482-492. ISSN 0305-1048

Greene, Lesley H, Lewis, Tony E, Addou, Sarah, Cuff, Alison, Dallman, Tim, Dibley, Mark, Redfern, Oliver, Pearl, Frances, Nambudiry, Rekha, Reid, Adam, Sillitoe, Ian, Yeats, Corin, Thornton, Janet M and Orengo, Christine A (2007) The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Research, 35 (DI). D291-D297. ISSN 0305-1048

Dore, A S, Kilkenny, M L, Jones, S A, Oliver, A W, Roe, S M, Bell, S D and Pearl, L H (2006) Structure of an archaeal PCNA1-PCNA2-FEN1 complex: elucidating PCNA subunit and client enzyme specificity. Nucleic Acids Research, 34 (16). pp. 4515-4526.

Roe, Mark, Bell, Stephen, Doré, Andrew, Sarah, Jones, Kilkenny, Mairi, Pearl, Laurence and Oliver, Antony (2006) Structure of an archaeal PCNA1-PCNA2-FEN1 complex: elucidating PCNA subunit and client enzyme specificity. Nucleic Acids Research, 34 (16). pp. 4515-4526. ISSN 0305-1048

Pearl, Frances, Todd, Annabel, Sillitoe, Ian, Dibley, Mark, Redfern, Oliver, Lewis, Tony, Bennett, Christopher, Marsden, Russell, Grant, Alistair, Lee, David, Akpor, Adrian, Maibaum, Michael, Harrison, Andrew, Dallman, Timothy, Reeves, Gabrielle, Diboun, Ilhem, Addou, Sarah, Lise, Stefano, Johnston, Caroline, Sillero, Antonio, Thornton, Janet and Orengo, Christine (2005) The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Research, 33 (S1). D247-D251. ISSN 0305-1048

Varnai, Peter and Zakrzewska, Krystyna (2004) DNA and its counterions: A molecular dynamics study. Nucleic Acids Research, 32 (14). pp. 4269-4280. ISSN 0305-1048

Dianova, Irina I, Sleeth, Kate M, Allinson, Sarah L, Parsons, Jason L, Breslin, Claire, Caldecott, Keith W and Dianov, Grigory L (2004) XRCC1-DNA polymerase beta interaction is required for efficient base excision repair. Nucleic Acids Research, 32 (8). pp. 2550-2555. ISSN 0305-1048

Oliver, A W, Amé, J C, Roe, S M, Good, V, de Murcia, G and Pearl, L H (2004) Crystal structure of the catalytic fragment of murine poly(ADP-ribose) polymerase-2. Nucleic Acids Research, 32 (2). pp. 456-464. ISSN 0305-1048

Shanahan, Hugh P, Garcia, Mario A, Jones, Susan and Thornton, Janet M (2004) Identifying DNA-binding proteins using structural motifs and the electrostatic potential. Nucleic Acids Research, 32 (16). pp. 4732-4741. ISSN 0360-4012

Nakamura, Jun, Asakura, Shoji, Hester, Susan D, de Murcia, Gilbert, Caldecott, Keith W and Swenberg, James A (2003) Quantitation of intracellular NAD(P)H can monitor an imbalance of DNA single strand break repair in base excision repair deficient cells in real time. Nucleic Acids Research, 31 (17). e104-e104. ISSN 0305-1048

Varnai, Peter, Giudice, Emmanuel and Lavery, Richard (2003) Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations. Nucleic Acids Research, 31 (5). pp. 1434-1443. ISSN 0305-1048

Alonso, Claudio R and Akam, Michael (2003) A Hox gene mutation that triggers Nonsense-mediated RNA decay and affects alternative splicing during Drosophila development. Nucleic Acids Research, 31 (14). pp. 3873-3880. ISSN 0305-1048

Caldecott, Keith (2003) A requirement for PARP-1 for the assembly or stability of XRCC1 nuclear foci at sites of oxidative DNA damage. Nucleic Acids Research, 31 (19). pp. 5526-5533. ISSN 0305-1048

Jones, Susan, Shanahan, Hugh P, Berman, Helen M and Thornton, Janet M (2003) Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Research, 31 (24). pp. 7189-7198. ISSN 0305-1048

Jones, Susan, Barker, Jonathan A, Nobeli, Irene and Thornton, Janet M (2003) Using structural motifs to identify proteins with DNA binding function. Nucleic Acids Research, 31 (11). pp. 2811-2823. ISSN 0305-1048

Smith, J., Riballo, E., Kysela, B., Baldeyron, C., Manolis, K., Masson, C., Lieber, M. R., Papadopoulo, D. and Jeggo, P. (2003) Impact of DNA ligase IV on the fidelity of end joining in human cells. Nucleic Acids Research, 31. pp. 2157-2167. ISSN 0305-1048

Smith, Julianne, Riballo, Enriqueta, Kysela, B, Baldeyron, Celine, Manolis, Kostas, Masson, Christel, Lieber, Michael R, Papadopoulo, Dora and Jeggo, Penny (2003) Impact of DNA ligase IV on the fidelity of end joining in human cells. Nucleic Acids Research, 31(8). pp. 2157-2167. ISSN 0305-1048

Varnai, Peter, Djuranovic, Dragana, Lavery, Richard and Hartmann, Brigitte (2002) Alpha/gamma Transitions in the B-DNA backbone. Nucleic Acids Research, 30 (24). pp. 5398-5406. ISSN 0305-1048

Ho, J C, Warr, N J, Shimizu, H and Watts, Felicity (2001) SUMO modification of Rad22, the Schizosaccharomyces pombe homologue of the recombination protein Rad52. Nucleic Acids Research, 29 (20). pp. 4179-4186. ISSN 1362-4962

Jones, Susan, Daley, David T A, Luscombe, Nicholas M, Berman, Helen M and Thornton, Janet M (2001) Protein-RNA interactions: a structural analysis. Nucleic Acids Research, 29 (4). pp. 943-954. ISSN 0305-1048

Gallie, Daniel R, Ling, Jun, Niepel, Mario, Morley, Simon J and Pain, Virginia M (2000) The role of 5 '-leader length, secondary structure and PABP concentration on cap and poly(A) tail function during translation in Xenopus oocytes. Nucleic Acids Research, 28 (15). pp. 2943-2953. ISSN 0305-1048

Doherty, Aidan J, Serpell, Louise C and Ponting, Christopher P (1996) The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Research, 24 (13). pp. 2488-2497. ISSN 03051048

Tavassoli, Manoochehr, Shayeghi, Maryam, Nasim, Anwar and Watts, Felicity Z (1995) Cloning and characterisation of the Schizosaccharomyces pombe rad32 gene: A gene required for repair of double strand break and recombination. Nucleic Acids Research, 23 (3). pp. 383-388. ISSN 03051048

Doe, Claudette L, Murray, Johanne M, Shayeghi, Maryam, Hoskins, Marie, Lehmann, Alan R, Carr, Antony M and Watts, Felicity Z (1993) Cloning and characterisation of the Schizosaccharomyces pombe rad8 gene, a member of the SNF2 helicase family. Nucleic Acids Research, 21 (25). pp. 5964-5971. ISSN 0305-1048

Carr, Antony M, Sheldrick, Katherine S, Murray, Johanne M, Al-Harithy, Rowyda, Watts, Felicity Z and Lehmann, Alan R (1993) Evolutionary conservation of excision repair in Schizosaccharomyces pombe: Evidence for a family of sequences related to the Saccharomyces cerevisiae RAD2 gene. Nucleic Acids Research, 21 (6). pp. 1345-1349. ISSN 0305-1048

Murray, Johanne M, Doe, Claudette L, Schenk, Paul, Carr, Antony M, Lehmann, Alan R and Watts, Felicity Z (1992) Cloning and characterisation of the S.pombe rad15 gene, a homologue to the S.cerevisiae RAD3 and human ERCC2 genes. Nucleic Acids Research, 20 (11). pp. 2673-2678. ISSN 03051048

Eyre-Walker, Adam (1992) Evidence that both G + C rich and G + C poor isochores are replicated early and late in the cell cycle. Nucleic Acids Research, 20 (7). pp. 1497-1501. ISSN 0305-1048

Fenech, M, Carr, A M, Murray, J, Watts, F Z and Lehmann, A R (1991) Cloning and characterization of the rad4 gene of Schizosaccharomyces pombe; a gene showing short regions of sequence similarity to the human XRCC1 gene. Nucleic Acids Research, 19 (24). pp. 6737-6741. ISSN 0305-1048

Murray, Johanne M, Carr, Antony M, Lehmann, Alan R and Watts, Felicity Z (1991) Cloning and characterisation of the rad9 DNA repair gene from Schizosaccharomyces pombe. Nucleic Acids Research, 19 (13). pp. 3525-3531. ISSN 0305-1048

Watts, F Z and Moore, A L (1989) Nucleotide sequence of a full length cDNA clone encoding a polyubiquitin gene from Pisum sativum. Nucleic Acids Research, 17 (23). ISSN 03051048

This list was generated on Tue Jun 27 01:17:42 2017 BST.