The bulk-surface finite element method for reaction-diffusion systems on stationary volumes

Madzvamuse, Anotida and Chung, Andy H W (2016) The bulk-surface finite element method for reaction-diffusion systems on stationary volumes. Finite Elements in Analysis and Design, 108. pp. 9-21. ISSN 0168-874X

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In this work we present the bulk-surface finite element method (BSFEM) for solving coupled systems of bulk-surface reaction-diffusion equations (BSRDEs) on stationary volumes. Such systems of coupled bulk-surface partial differential equations arise naturally in biological applications and fluid dynamics, for example, in modelling of cellular dynamics in cell motility and transport and diffusion of surfactants in two phase flows. In this proposed framework, we define the surface triangulation as a collection of the faces of the elements of the bulk triangulation whose vertices lie on the surface. This implies that the surface triangulation is the trace of the bulk triangulation. As a result, we construct two finite element spaces for the interior and surface respectively. To discretise in space we use piecewise bilinear elements and the implicit second order fractional-step $\theta$ scheme is employed to discretise in time. Furthermore, we use the Newton method to treat the nonlinearities. The BSFEM applied to a coupled system of BSRDEs reveals interesting patterning behaviour. For a set of appropriate model parameter values, the surface reaction-diffusion system is not able to generate patterns everywhere in the bulk except for a small region close to the surface while the bulk reaction-diffusion system is able to induce patterning almost everywhere. Numerical experiments are presented to reveal such patterning processes associated with reaction-diffusion theory.

Item Type: Article
Keywords: Bulk-surface reaction-diffusion systems, bulk-surface finite elements, pattern formation, finite elements
Schools and Departments: School of Mathematical and Physical Sciences > Mathematics
Subjects: Q Science
Q Science > QA Mathematics
Q Science > QA Mathematics > QA0297 Numerical analysis
Depositing User: Anotida Madzvamuse
Date Deposited: 05 Oct 2015 09:31
Last Modified: 25 Mar 2017 07:09

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